Bioinformatics Group @ IPM
STONHelp
STructure comparisON ( Beta version )
Input File Format
Each file in PDB format is acceptable (with .pdb or .ent extension).
Chain ID
In case your protein has multi chains you can run STON on selected chains. if no chain is selected, the first chain will be selected.
Distance
This the value that bounds the RMSD of the sequence. Since every pair of acids of the matching has distance less than the value of this option thus the RMSD will be bounded by this value.
Rotation